Package index • foundr

All functions

CCcolors: Collaborative Cross colors
abscorcalc(): Calculate Absolute Correlations
area_under_curve(): Calculate area under curve over time
bestcor() is_bestcor() ggplot_bestcor() autoplot(<bestcor>) summary_bestcor() summary(<bestcor>): Traits with Best Correlation
biplot_signal() biplot_stat() biplot_pca() biggplot() biplot_evidence(): Prepare biplot signal data
conditionContrasts() ggplot_conditionContrasts() plot(<conditionContrasts>) summary_conditionContrasts() summary(<conditionContrasts>) c(<conditionContrasts>) split(<conditionContrasts>): Contrasts of Conditions
cor_compare(): Compare correlation matrices using upper triangle
cor_extreme(): Extreme correlation comparison summaries
effectplot(): Effect Plots
eigen_contrast(): Eigen Contrasts
eigen_cor() ggplot_eigen_cor() autoplot(<eigen_cor>) subset(<eigen_cor>): Correlation of eigentraits across responses
eigen_traits(): Compare Eigen Traits with Original Traits
ggplot_evidence_spread(): GGplot of evidence vs spread
ggplot_module(): GGplot of Module P-values
ggplot_template(): GGplot template for other routines
ggplot_time(): GGplot of object over time
ggplot_traitPairs(): GGplot of trait pairs
ggplot_traitSolos() autoplot(<traitSolos>) plot(<traitSolos>): GGplot by strain and condition
ggplot_wgcnaModules() autoplot(<wgcnaModules>) ggplot_listof_wgcnaModules() autoplot(<listof_wgcnaModules>): GGplot of WGCNA Modules
join_signal(): Join trait data and signal
module_band() ggplot_module_band() autoplot(<module_band>): Module Band Object
module_kMEs() ggplot_module_kMEs() autoplot(<module_kMEs>) subset_module_kMEs() subset(<module_kMEs>): Extract Modules and kMEs
nqrank(): Normal scores as qnorm of rank
partition(): Partition Trait into Signal, Rest and Noise
pivot_pair(): Pivot pair of traits
sampleData: Sample Data for Package foundr
separate_time(): Separate Time Traits
stats_time(): Stats over Time
strain_time(): Strains over Time
strainstats() summary_strainstats() summary(<strainstats>): Use Broom to Find Stats for Model Summaries
subset_eigen_cor(): Subset of eigen_cor object
subset_trait_names(): Subset Trait Data on Names
summary(<listof_wgcnaModules>) summary_wgcnaModules() summary(<wgcnaModules>): Summary of List of WGCNA Modules
timetraits(): Get time trait roots
traitAncova() summary_traitAncova() ggplot_traitAncova(): Trait Analysis of Covariance
traitPairs() autoplot(<traitPairs>) plot(<traitPairs>): Prepare pairs of traits for plotting
traitSolos() summary_traitSolos() summary(<traitSolos>): Select Traits and Strains for Response
traitTimes() ggplot_traitTimes() autoplot(<traitTimes>) plot(<traitTimes>): Traits over Time
trait_names(): Title
unite_datatraits(): Unite Dataset and Trait
volcano(): Volcano Plot