Extract Modules and kMEs

GGplot of Module kMEs

Subset module and kMEs

Usage

module_kMEs(object)

ggplot_module_kMEs(
  object,
  facetname,
  colorname,
  abskME = FALSE,
  title = paste("facet by", facetname, "with", colorname, "color"),
  ...
)

# S3 method for class 'module_kMEs'
autoplot(object, ...)

subset_module_kMEs(
  x,
  facetname,
  colorname,
  facetmodules = flev,
  colormodules = clev,
  ...
)

# S3 method for class 'module_kMEs'
subset(x, ...)

Arguments

object: object of class `module_kMEs`
facetname: name of facet response
colorname: name of color response
abskME: plot absolute values if `TRUE`
title: title of plot
...: additional parameters
x: object of class module_kMEs
facetmodules: names of color modules to keep
colormodules: names of color modules to keep

Value

object of class `module_kMEs`

ggplot object

data frame