Package index

All functions

comediator_region()

Create list with mediators in region

comediator_type()

Get mediators of same type as pheno_name

dipParApp() dipParServer() dipParInput() dipParUI() dipParOutput()

Shiny Diplotype Parameter module

downloadApp() downloadServer() downloadInput() downloadUI()

Download App

geneExonApp() geneExonServer() geneExonInput() geneExonOutput()

Shiny Genes and Exons with nearby SNPs module

geneRegionApp() geneRegionServer() geneRegionInput() geneRegionOutput()

Shiny Genes in SNP Region module

genoApp() genoServer() genoInput() genoOutput()

Shiny Allele App

genoDataApp() genoDataServer() genoDataInput() genoDataOutput()

Shiny Genotype Data App

genoEffectApp() genoEffectServer() genoEffectUI() genoEffectOutput()

Shiny Allele App

genoPlotApp() genoPlotServer() genoPlotInput() genoPlotOutput()

Shiny Genotype Data App

get_genes()

Get gene in region

hotspot() summary(<hotspot>) subset(<hotspot>) cbind(<hotspot>)

Hotspots for phenotypes

hotspotApp() hotspotServer() hotspotInput() hotspotUI() hotspotOutput()

Shiny Hotspot Panel App

hotspotDataApp() hotspotDataServer() hotspotDataInput() hotspotDataOutput()

Shiny Hotspot Data App

hotspotPlotApp() hotspotPlotServer() hotspotPlotOutput()

Shiny Hotspot Plot App

hotspotTableApp() hotspotTableServer() hotspotTableOutput()

Shiny Hotspot Table App

kinshipApp() kinshipServer() kinshipOutput()

Shiny Kinship App

mediateApp() mediateServer() mediateInput() mediateOutput()

Shiny Mediate Panel App

mediateDataApp() mediateDataServer() mediateDataInput() mediateDataUI() mediateDataOutput()

Shiny Mediate Data App

mediatePlotApp() mediatePlotServer() mediatePlotInput() mediatePlotOutput()

Shiny Mediate Plot App

patternApp() patternServer() patternInput() patternOutput()

Shiny Pattern Panel App

patternDataApp() patternDataServer() patternDataInput() patternDataUI() patternDataOutput()

Shiny Pattern Data App

patternPlotApp() patternPlotServer() patternPlotOutput()

Shiny Pattern Plot App

peakApp() peakServer() peakInput() peakOutput()

Shiny Phenotype App

peakReadApp() peakReadServer() peakReadOutput()

Shiny Peak Read App

phenoApp() phenoServer() phenoInput() phenoUI() phenoOutput()

Shiny Hotspot Panel App

phenoDataApp() phenoDataServer() phenoDataInput() phenoDataOutput()

Shiny Phenotype Data App

phenoNamesApp() phenoNamesServer() phenoNamesInput() phenoNamesOutput()

Shiny Phenotype Names App

phenoPlotApp() phenoPlotServer() phenoPlotOutput()

Shiny Phenotype Plot App

phenoReadApp() phenoReadServer() phenoReadOutput()

Shiny Phenotype Read App

phenoTableApp() phenoTableServer() phenoTableOutput()

Shiny Phenotype Table App

pheno_region() expr_region()

Create list with phenotypes in region

probsApp() probsServer() pairProbsServer() snpProbsServer()

Shiny Probability modules

projectApp() projectServer() projectUI() projectOutput()

Shiny Project App

project_classes() project_subject_model()

Project Classes

qtl2shinyApp() qtl2shinyServer() qtl2shinyUI()

Shiny QTL2 Shiny App

qtl2shiny_plot_theme()

QTL2 Shiny Plot Theme

qtl2shiny_theme()

QTL2 Shiny UI Theme

read_peaks() create_peak_class()

Read Peaks for Phenotypes by Class

read_pheno()

Read Phenotypes

read_project()

Read Project Data

read_query_rds()

Read Query for RDS Object

scan1covar()

Scan1 for traits with same covariates.

scanApp() scanServer() scanInput() scanOutput()

Shiny Scan Panel App

scanDataApp() scanDataServer() scanDataInput() scanDataOutput()

Shiny Scan Module

scatterApp() scatterServer() scatterInput() scatterOutput()

Shiny Scatter App

scatterPlotApp() scatterPlotServer() scatterPlotInput() scatterPlotOutput()

Shiny Scatter Plot App

setParApp() setParServer() setParInput() setParUI() setParOutput()

Shiny Setup Parameters App

snpFeatureApp() snpFeatureServer() snpFeatureOutput()

Shiny SNP Features in SNP Region module

snpGeneApp() snpGeneServer() snpGeneInput() snpGeneOutput()

Shiny SNP Gene App

snpListApp() snpListServer() snpListInput() snpListOutput()

Shiny SNP List App

snpPatternApp() snpPatternServer() snpPatternOutput()

Shiny SNP Pattern App

snpPlotApp() snpPlotServer() snpPlotOutput()

Shiny SNP plot module

snpTableApp() snpTableServer() snpTableOutput()

Shiny SNP summary module

triadApp() triadServer() triadInput() triadOutput()

Shiny Triad App

winParApp() winParServer() winParInput() winParOutput()

Shiny Window Parameters App