Plot of object of class listof_scan1coeff — ggplot_listof

Plot object of class listof_scan1coeff, which is a list of objects of class scan1coef.

Usage

ggplot_listof_scan1coef(
  object,
  map,
  columns = NULL,
  col = NULL,
  scan1_output = NULL,
  facet = "pattern",
  ...
)

# S3 method for class 'listof_scan1coef'
autoplot(object, ...)

Arguments

object: object of class listof_scan1coeff
map: A list of vectors of marker positions, as produced by insert_pseudomarkers.
columns: Vector of columns to plot
col: Vector of colors, same length as columns. If NULL, some default choices are made.
scan1_output: If provided, we make a two-panel plot with coefficients on top and LOD scores below. Should have just one LOD score column; if multiple, only the first is used.
facet: Plot facets if multiple phenotypes and group provided (default = "pattern").
...: arguments for ggplot_coef
pattern: Use phenotype names as pattern.

Value

object of class ggplot

Author

Brian S Yandell, brian.yandell@wisc.edu