Harmonize WGCNA module — wgcna_harmonize • modulr

This loads `geneTree`, `kMEs`, `merge`, `params` and `dynamicColors_2` from an `Rdata` object and creates and `RDS` object for later reuse.

Usage

wgcna_harmonize(
  mod = "WGCNAmodule",
  moddir = ".",
  modRdata = NULL,
  params = NULL,
  annot = NULL,
  harmonizeddir = ".",
  force = FALSE
)

Arguments

mod: name for module object
moddir: director
modRdata: file name ending with `.Rdata`
params: list of parameters
annot: annotation file (ignored if `NULL`)
harmonizeddir: name of directory to save `RDS` object in its `moddir`
force: force creation if `TRUE`

Value

invisible file name for created object