Create WGCNA Modules

Data in `object` are assumed to be in long format with columns a subset of "dataset", "strain", "sex", "animal", "condition"

Usage

wgcnaModules(object, params = NULL, ...)

listof_wgcnaModules(traitContr, params = NULL)

plot_wgcnaModules(x, main = "Gene dendrogram and module colors", ...)

# S3 method for class 'wgcnaModules'
plot(x, ...)

Arguments

object

harmonized data frame from routine `foundr`

params

list of parameters for WGCNA routines

...

additional parameters

traitContr

data frame of trait contributions

x

object of class `wgcnaModules`

main

title for dendrogram plot

Value

object of class wgcnaModules

object of class `listof_wgcnaModules`